Software Engineer, Software-Ingenieur, Python

Your group EMBL Imaging Centre Your supervisor Timo Zimmermann

The Software Engineer develops and sustains software that enables advanced light- and electron-microscopy platforms at the EMBL Imaging Centre. Working with engineers, physicists, biologists and research users, the role translates scientific and operational needs into reliable, maintainable solutions for instrument control, automation and real-time data workflows. The postholder owns delivery across the software lifecycle, makes technical decisions within agreed objectives and operates with substantial day-to-day autonomy while collaborating closely on system-level design.

The role strengthens the Centre’s capacity to deliver innovative imaging capabilities to EMBL and the wider life-science community.

• Own the development, operation and lifecycle evolution of the microscopy-control software platform, enabling reliable automation and streamlined workflows.
• Design and integrate software and electronic control components that enable new instrument capabilities, data acquisition and real-time analysis.
• Translate scientific and user requirements into maintainable control schemes and user interfaces with engineers, physicists, biologists and research users.
• Establish and apply professional software-engineering practices across architecture, testing, version control, documentation, sharing, deployment and long-term maintenance.
• Evaluate and introduce suitable approaches, including AI-enabled automation, where they improve robustness, reproducibility or scientific value.
• Diagnose and resolve complex software-hardware integration issues, balancing performance, usability, reliability and research needs.
• Maintain records that support reproducibility, knowledge transfer, dissemination and future development.
• Provide expert support and enable effective use of the platforms by EMBL and external researchers.

• MSc or similar degree in software engineering, computer science, engineering, physics or a related field, or an equivalent combination of education, training and experience.
• Demonstrated experience developing maintainable software for hardware control, scientific instrumentation or similarly complex technical systems.
• Advanced software-development skills in one or more relevant programming languages or development environments, such as C++, Python, LabVIEW, Java or MATLAB.
• Experience designing graphical user interfaces for instrumentation control, using frameworks such as Qt or Tk, and integrating software components across processes or programming languages.
• Strong software-engineering capability across architecture, integration, testing, documentation, software sharing and long-term maintenance, including experience using version-control systems such as Git.
• The ability to collaborate with software and hardware engineers, physicists, biologists and other stakeholders, translating scientific requirements into technical solutions and communicating clearly with non-specialists.

• Experience developing low-level, embedded or real-time control systems using languages, platforms or environments such as C, Rust, Arduino, microcontrollers, NI Real-Time or NI FPGA.
• Experience programming specialist computing hardware, including FPGAs or GPUs, using technologies such as CUDA, VHDL, Verilog or Xilinx Vivado, particularly for high-speed or real-time image-data processing.
• Experience integrating scientific instruments and hardware—including cameras, detectors, positioning stages, lasers and data-acquisition devices—using relevant communication protocols such as MQTT, ideally within microscopy, bioimaging or adaptive hardware-control workflows.

Contract length: 3 years

Salary:
Grade 6 with a monthly salary starting from 4.713.20 EUR net of tax, excluding health insurance and pension contributions, plus additional EMBL benefits.

We look forward to receiving your application.

This selection process will consist of two interview stages. Shortlisted candidates will first be invited to an online interview following the Final date to receive…