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Scientist, Computational Medicinal Chemistry

Job in 4040, Basel, Kanton Basel-Landschaft, Switzerland
Listing for: Monte Rosa Therapeutics
Full Time position
Listed on 2026-01-01
Job specializations:
  • Research/Development
    Research Scientist, Drug Discovery
Salary/Wage Range or Industry Benchmark: 30000 - 80000 CHF Yearly CHF 30000.00 80000.00 YEAR
Job Description & How to Apply Below

Overview

We are seeking a highly motivated, creative Computational Medicinal Chemist to support drug discovery programs. The successful candidate will operate at the interface of computational chemistry and medicinal chemistry, serving as an embedded, project-facing contributor within lead identification and lead optimisation (LI/LO) teams. The position will also involve contributions to earlier drug discovery phases and the development of computational tools with direct application in medicinal chemistry.

This role is strongly project-driven: you will apply computational approaches to directly inform compound design, optimisation, and decision-making, working closely with multidisciplinary teams in chemistry, biology, and data science. The position offers the opportunity to make a tangible impact on the design and optimisation of novel chemical matter, leveraging the company’s core expertise in degrader discovery.

Responsibilities
  • Serve as a core computational contributor on project teams, supporting lead identification, hit-to-lead, and lead optimisation through structure- and ligand-based design.
  • Apply and integrate computational techniques such as molecular docking, ligand-based design, diversity and conformational analyses, molecular modelling, and related approaches to guide SAR exploration and compound optimisation.
  • Contribute to the design and prioritisation of project-relevant compound libraries and collections in close collaboration with medicinal chemists.
  • Communicate computational results clearly and effectively to cross-functional teams, translating analyses into actionable medicinal chemistry guidance.
  • Contribute to the development and continuous improvement of computational workflows, tools, and best practices within the realm of computational medicinal chemistry.
Qualifications
  • PhD in computational chemistry, chemistry, biophysics, or a related scientific discipline with a strong computational focus.
  • 1-4 years of Postdoctoral training and/or relevant industry experience in pharmaceutical or biotech drug discovery.
  • Demonstrated application of ligand- and structure-based design approaches in small-molecule drug discovery projects.
  • Working knowledge of medicinal chemistry and preclinical drug design in the context of compound optimisation, including SAR development, ADME considerations, and multiparameter optimisation.
  • Solid understanding of protein–ligand interactions and structure-based compound optimisation strategies, along with hands‑on experience with multiple core computational techniques in ligand- and structure-based drug design.
  • Hands‑on experience with molecular visualisation and modelling software such as PyMOL and Schrödinger suite for structure analysis and drug design applications.
  • Proficiency in Python and cheminformatics toolkits with practical application of these skills for scientific scripting, data analysis, workflow development, and management and analysis of large chemical datasets.
  • Proficiency in statistical analysis and data visualisation tools (e.g. Jupyter notebooks, Spotfire).
  • Familiarity with machine‑learning approaches for small-molecule activity and ADME property prediction, and experience applying model outputs in a medicinal chemistry or project context.
  • Experience working effectively within multidisciplinary project teams and communicating computational results to non‑computational scientists.
  • Strong scientific writing skills and track record of publications in peer-reviewed journals.
  • Experience in targeted protein degradation is a plus.
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