Protein Function Development Team Leader

Overview We are seeking an exceptional candidate for the EMBL-EBI Faculty role of Protein Function Development Team Leader, to be responsible for leading the engineering and bioinformatics infrastructure that underpins one of the most important resources in the life sciences, Uniprot . Uni Prot is the world's leading resource for protein sequences and functional annotation, used by hundreds of thousands of researchers globally every day.

It provides comprehensive annotations across an ever-growing number of proteomes spanning the tree of life, integrating experimentally determined functional data from the literature with state-of-the-art computational predictions and richly interconnected data from partner resources. As the demands on Uni Prot continue to grow, in data volume, annotation depth, and the diversity of research applications it supports, a robust and forward-looking bioinformatics infrastructure is essential to its continued success and impact.

This role reports to Sameer Velankar , Head of the Macromolecular Structure, Chemistry and Bioimaging section, and will work closely with Alex Bateman, Head of Protein Sequence Resources, and Stephanie Lo, Protein Function Content Team Leader, who leads the Uni Prot biocuration team.

Your role As our Protein Function Development Team Leader you will lead a multidisciplinary team of approximately 17 staff, including software engineers, data scientists, bioinformaticians, and UX experts, in the production and delivery of protein data  team is responsible for designing and maintaining novel data stores and production workflows, developing innovative methods for protein annotation, and building and sustaining the website and dissemination technologies that make Uni Prot accessible to the global research community, including APIs and advanced data visualisations.

You will bring strong knowledge of production and website architectures, guiding the team towards sustainable, scalable solutions that can meet the growing demands placed on Uni Prot. They will coordinate the development of new interfaces and analytical tools for protein representation and analysis, while overseeing the maintenance of existing tools and codebases and leading their migration to modern technologies and infrastructures.

A critical aspect of this role is strategic foresight: anticipating future demands from biological research, evaluating emerging technical advances, and balancing innovation with the continued delivery of core priorities. This includes driving the integration of AI-based tools and approaches to enhance Uni Prot's services, annotation processes, and user experience. A key strategic priority for this hire is to lead a cultural and technical shift towards AI-first development, leveraging AI coding assistants and generative tools to accelerate delivery, improve code quality, and reduce technical debt across both platforms.

Collaboration is central to this role. The Team Leader will work closely with the global Uni Prot consortium partners, engage with diverse user and data resource communities, and maintain strong working relationships with EMBL-EBI resources with which Uni Prot shares significant data flows and interdependencies. You have Advanced degree (PhD preferred) in bioinformatics, computer science, or a related field Proven leadership experience in scientific data management, software development, or bioinformatics, with a track record of delivering high-quality results in a multidisciplinary environment Experience designing, developing, and maintaining scalable databases, services, and websites, with the ability to organise and process data at terabyte scale Strong knowledge of software engineering principles and deployment infrastructures, including commercial cloud platforms and container orchestration technologies such as Kubernetes Demonstrated experience using AI coding tools (e.g. Claude Code, Codex, Git Hub Copilot, Cursor) in a production environment.

Familiarity with data standards and interoperability frameworks relevant to the life sciences Demonstrated experience in project management and staff management, including mentoring and developing team members Experience in grant writing, grant management, and reporting to funding bodies Strategic vision and the ambition to develop high-impact, globally used data services for the life sciences research community A collaborative approach to working with international partners, consortia, and user communities A proactive and positive problem-solving mindset Inclusive leadership skills - actively seek to identify your own biases and consider a range of perspectives to inform decision-making and the way you lead and collaborate with others Demonstrate key leadership qualities self awareness, empathy, growth mindset, active listening, empowerment of others and superior communication skills You should be dedicated to developing effective relationships across EMBL demonstrating a commitment to inclusive behaviours…