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Associate Scientist, Post Doc Fellow- AI​/ML & Computational Biology Antigen Design

Job in Philadelphia, Philadelphia County, Pennsylvania, 19117, USA
Listing for: Scorpion Therapeutics
Full Time position
Listed on 2026-10-09
Job specializations:
  • Research/Development
    Data Scientist
Salary/Wage Range or Industry Benchmark: 65000 - 95000 USD Yearly USD 65000.00 95000.00 YEAR
Job Description & How to Apply Below
Position: Associate Scientist, Post Doc Fellow- AI/ML & Computational Biology for Antigen Design
Role

Postdoctoral Scientist specializing in AI/ML and computational biology for vaccine antigen design, focusing on structure-based conformational stabilization of viral proteins.

Responsibilities

develop and benchmark AI/ML workflows (protein language and folding models), integrate physics-based simulations with deep learning, collaborate with experimental teams for iterative model refinement, author scientific publications, and present research at conferences.

Requirements

PhD in Computational Biology, Bioinformatics, Computer Science, Biophysics, or related field (or completion by Spring 2027); proven experience with machine learning models applied to biomolecular data (e.g., ESM, Alpha Fold, ProteinMPNN); proficiency in Python, ML frameworks (PyTorch, JAX), and high-performance computing; publication record.

Preferred

experience with structural modeling tools (Colab Fold, Rosetta), molecular dynamics (GROMACS, AMBER), biophysical characterization methods, and conformationally dynamic protein complexes.

High-Value

focus on viral antigen design, structure stabilization, vaccine discovery, and integration of computational-experimental workflows.

Location

onsite West Point, PA with approximately 10% travel.

Collaboration

The role emphasizes industry-academic collaboration, cutting-edge AI/ML development for immunogen design, and multidisciplinary teamwork in infectious diseases and vaccine research.

Position Requirements
10+ Years work experience
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