Advisor - Lab Automation Scientist

At Lilly, we unite caring with discovery to make life better for people around the world. We are a global healthcare leader headquartered in Indianapolis, Indiana. Our employees around the world work to discover and bring life-changing medicines to those who need them, improve the understanding and management of disease, and give back to our communities through philanthropy and volunteerism. We give our best effort to our work, and we put people first.

We’re looking for people who are determined to make life better for people around the world.

Join us at the forefront of AI-driven drug discovery!

The Biologics Automation and High-throughput Technologies Group at the Lilly Biotechnology Center in San Diego is seeking a Senior Lab Automation Scientist to revolutionize early-stage discovery and screening of protein therapeutics. We’re building the future of biotherapeutics research by creating lab-in-the-loop systems that seamlessly integrate AI agents with physical automation, closing the discovery-to-data cycle in unprecedented ways.

The ideal candidate will have hands-on experience with advanced lab automation equipment, laboratory software, and data analysis tools. As a key member of our team, you’ll harness the latest technologies in automation equipment and artificial intelligence to transform how we discover and develop life-changing medicines. You’ll work at the intersection of biology, data science, and robotics—designing intelligent, adaptive workflows where AI-powered decision-making drives autonomous laboratory operations in real time.

• Ensure that common lab automation equipment commonly used in biotherapeutic discovery labs is maintained in good working order. This includes stand-alone liquid handlers/micro-dispensers, plate readers/washers, protein quantification instruments, colony/plaque pickers, sequencing instruments etc., as well as several fully integrated robotic systems.
• Work closely with automation engineers on the team who are currently responsible for installing, maintaining, and qualifying automation equipment, developing operational scripts, updating scheduling software, and providing support to non-automation scientists throughout the site.
• Work collaboratively with protein discovery, engineering, and protein expression groups at the San Diego site to optimize research efficiencies through implementation of novel automation process improvements and technologies.
• Collaborate with both external vendors and internal teams to design, implement, and validate new automation equipment, integrated robotic workstations, lab digitalization technologies, as well as autonomous laboratory automation systems and closed-loop learning solutions.

• Ph.D. in Bioengineering, Biomedical Engineering, Chemical Engineering, Mechanical Engineering or related discipline with at least 2 years of industry experience (following post-doctorate), or
• M.S. in Bioengineering, Biomedical Engineering, Chemical Engineering, Mechanical Engineering or related discipline with a minimum of 10 years of automation engineer-specific experience, or
• B.S. in Bioengineering, Biomedical Engineering, Chemical Engineering, Mechanical Engineering or related discipline with a minimum of 13 years of automation engineer-specific experience
• Experience should include relevant industry experience, in a well-equipped automation lab, preferably in a pharmaceutical company or an automation provider.

• Proficiency in the operation, maintenance, troubleshooting and optimization of liquid handlers (Beckman, Hamilton, High Res, Lynx etc.), micro-dispensers (Bio Tek, Themo, Formulatrix, etc.) microplate washers and readers, high throughput antibody quantification instruments and
  
  E. coli colony plating/picking (QPix) is a must.
• Hands‑on expertise in the operation, maintenance, troubleshooting and optimization of integrated automation workstations including schedulers such as SAMI, Green Button Go, Cellario, Director, Retisoft Genera or Agilent VWorks is required.
• Programming experience using Python, Java, C#, Visual Basic, or SQL is an asset.
• Experience with…