Senior LIMS Engineer

Overview

Senior LIMS Engineer at Veracyte, Inc.

This is a hybrid role based out of our San Diego office.

The Position

We are seeking a highly skilled and motivated LIMS Engineer to lead the architecture and design of cutting-edge Laboratory Information Management Systems (LIMS) and their integrations within a complex, fast-paced environment. The LIMS Engineer will collaborate closely with the LIMS Administrator, Lab Operations teams, and cross-functional technology teams to ensure that the platform is scalable, efficient, and aligned with both scientific and business objectives.

This role requires hands-on experience with modern LIMS platforms such as L7 Informatics, Labbit, or other industry-leading solutions, and will be responsible for building robust system integrations using technologies like AWS, Mulesoft, and APIs. Strong programming skills in Python, SQL, Power Shell, and related tools will be essential for platform customization, automation, and data workflows in compliance-driven environments.

This is a hybrid role based out of our San Diego office.

Key Responsibilities

• Lead or support full life-cycle LIMS implementations, including requirement gathering, system design, configuration, testing, deployment, and documentation.

• Design and develop scalable and maintainable LIMS architectures tailored to laboratory workflows and compliance requirements.

• Customize and extend LIMS platforms using scripting and automation tools to improve usability and performance.

• Collaborate with cross-functional teams including IT, lab personnel, and third-party vendors to ensure seamless system operation and user satisfaction.

• Develop and maintain integrations between LIMS and other enterprise platforms using APIs, Mulesoft, AWS services, and other middleware tools.

• Write and maintain scripts and tools using Python, SQL, Power Shell, and other languages to support system operations, data migrations, and automated workflows.

• Support data structure development and integration efforts, especially using JSON and/or GraphDB

• Ensure LIMS systems are compliant with regulatory standards such as GxP, CAP/CLIA, and other relevant quality frameworks.

• Provide ongoing support, troubleshooting, performance tuning, and end-user training for LIMS systems

Who You Are

• Bachelor’s or Master’s degree in Computer Science, Bioinformatics, Engineering, or a related technical field.

• 5-7+ years of experience in LIMS engineering, implementation, and support.

• Hands-on experience with one or more modern LIMS platforms (e.g., L7 Informatics, Labbit, Thermo Fisher Sample Manager, Lab Ware, etc.).

• Proficiency in JSON, Python, SQL, Power Shell, and scripting for automation and data processing.

• Strong understanding of LIMS architecture, relational databases, and lab workflows.

• Proven experience in platform integrations using AWS services, Mulesoft, and REST/SOAP APIs.

• Solid grasp of data security, integrity, and compliance in regulated environments.

• Excellent problem-solving, communication, and documentation skills.

Preferred Qualifications

• Experience with Agile development methodologies and Dev Ops practices.

• Familiarity with CI/CD pipelines and infrastructure-as-code (e.g., Terraform, Cloud Formation).

• Knowledge of laboratory instruments and ELNs (Electronic Lab Notebooks) integration.

• Certification in AWS, Mulesoft, or relevant LIMS platforms.

The final salary offered to a successful candidate will be dependent on several factors that may include but are not limited to the type and length of experience within the job, type and length of experience within the industry, education, etc. Base pay is one part of the Total Package that is provided to compensate and recognize employees for their work, and this role may be eligible for additional discretionary bonuses/incentives, and restricted stock units.

Veracyte is a multi-state employer, and this salary range may not reflect positions that work in other states.

Pay range

$143,000—$157,000 USD

What We Can Offer You

Veracyte is a growing company that offers significant career opportunities if you are curious, driven, patient-oriented and aspire to help us build a great company.…