Software Developer, Data Scientist, Data Analyst

Software Developer 1 at Stanford University summary:

A Software Developer 1 at Stanford University's Department of Genetics supports the development and scaling of cloud-based applications for automated analysis of single-cell and spatial omics data, enabling advances in developmental biology and disease modeling. The role involves designing, implementing, maintaining, and troubleshooting software systems in collaboration with interdisciplinary teams in a fast-paced academic research environment. The position also supports research translation, commercialization strategies, and scientific communication efforts.

The Department of Genetics in the Stanford University School of Medicine is a world-renowned hub for innovation in genomics, computational biology, and translational research. Our lab focuses on developing next-generation computational frameworks and automatic data analyses systems to analyze single-cell and spatial omics data, enabling new discoveries in developmental biology and disease modeling.

We are seeking up to two Software Developer 1 to join our interdisciplinary team and support the development of a modular automatic data analyses system for automating single-cell and spatial data analysis. The ideal candidate will contribute to the design, implementation, and scaling of cloud-based applications that power predictive models of organogenesis and disease progression.

This is an excellent opportunity to work at the forefront of biomedical data science, collaborating with world-class researchers, engineers, and entrepreneurs in a fast-paced academic and translational research environment.

Duties include:

• Assess user needs and requirements.
• Design and develop applications that may involve sophisticated data manipulation.
• Maintain and update existing programs.
• Troubleshoot and solve technical problems.
• Create programs to meet reporting and analysis needs.
• Design and implement user and operations training programs.
• Document changes in software for end users.
• Follow team software development methodology.
• Serve as technical resource with respect to applications.
• Support research translation, licensing, and commercialization strategy, including coordination with venture capital firms and Stanford’s innovation ecosystem.
• Assist with scientific writing, data visualization, and manuscript preparation.

* - Other duties may also be assigned.

DESIRED

QUALIFICATIONS:

• Bachelor’s degree or higher in Computer Science, Bioinformatics, Biomedical Engineering, Management Science & Engineering, or a related field.
• Strong background in data science, or computational biology, especially in handling single-cell, spatial transcriptomics, or imaging data.
• Strong background in automatic data analyses tool development and deployment, distributed systems and others
• Proficiency in Python, R, or other scientific programming languages, with experience in software development and data pipeline automation.
• Experience with cloud computing platforms (e.g., AWS, GCP) and collaborative development tools (e.g., Git Hub, Docker).
• Familiarity with scientific publication processes, manuscript preparation, and figures.
• Demonstrated ability to assess user needs, troubleshoot complex technical issues, and design user-friendly, scalable applications.
• Knowledge of research translation and commercialization strategy, including startup planning and engagement with venture capital firms.
• Experience preparing research presentations, grant proposals, or supporting industry/academic collaborations.
• Ability to work independently and collaboratively across interdisciplinary teams in a fast-paced academic or startup-like environment.
• Excellent communication and organizational skills, with attention to detail and strong documentation practices.

EDUCATION & EXPERIENCE (REQUIRED):

Bachelor's degree and three years of relevant experience or a combination of education and relevant experience.

KNOWLEDGE,

SKILLS AND ABILITIES

(REQUIRED):

• Working knowledge of latest software and design standards.
• Ability to define and solve logical problems for technical applications.
• Knowledge of and ability to select, adapt, and effectively use a variety of programming methods.
• Ability to recognize and recommend needed changes in user and/or operations procedures.
• Basic knowledge of software engineering principles.
• Strong knowledge of at least one programming language.

CERTIFICATIONS & LICENSES:

None.

PHYSICAL REQUIREMENTS*:

• Constantly perform desk-based computer tasks.
• Frequently sit, grasp lightly/fine manipulation.
• Occasionally stand/walk, writing by hand.
• Rarely use a telephone, lift/carry/push/pull objects that weigh up to 10 pounds

* - Consistent with its obligations under the law, the University will provide reasonable accommodation to any employee with a disability who requires accommodation to perform the essential functions of his or her job.

WORKING CONDITIONS:

May work extended hours, evening and weekends.

WORK STANDARDS (from JDL):

• Interpersonal
  
  Skills:
  
  Demonstrates the ability to work well with Stanford…