Research Data Analyst , Molecular & Cell Biology

Research Data Analyst 3 (5274C), Molecular & Cell Biology - #85533

The Department of Molecular and Cell Biology (MCB) at the University of California, Berkeley is a leading hub for research and teaching focused on the molecular and cellular mechanisms that drive life. MCB supports a highly interdisciplinary environment, spanning biochemistry, genetics, genomics, bioinformatics, cell and developmental biology, immunology, neurobiology, and more.

Research within MCB leverages diverse model systems including microbes, plants, and vertebrates to answer fundamental biological questions. The department is organized into five core divisions:
Biochemistry and Molecular Biology;
Cell and Developmental Biology;
Genetics, Genomics and Development;
Molecular Therapeutics; and Immunology and Molecular Medicine.

The Rokhsar Lab, within MCB, operates at the intersection of genetics, genomics, and computational biology. The lab focuses on genome assembly and annotation, development of computational tools for sequencing data analysis, and evolutionary genomics across a wide range of plant and animal systems.

This position is responsible for developing and applying custom computational analyses of genome-wide datasets, with special focus on complex plant genomes. These analyses include statistical and quantitative genetical studies, and comparative genomics including large-scale intra‑specific (pan‑genome) and inter‑specific evolutionary studies. The position works closely with the Center for Advances Bioenergy and Bioproducts Innovation (CABBI), whose ultimate goal is to develop/improve feedstock for bioenergy and bioproduct applications.

The First Review Date for this job is:
May 19, 2026

• Execute genomic research projects – based on input from supervisor, plan and design custom computational pipelines that address complex plant‑genome questions for the Center for Advanced Bioenergy and Bioproducts Innovation (CABBI)
• Develop and apply custom computational analyses of genome‑wide datasets – build, tune, and run pipelines for whole‑genome shotgun assembly of highly repetitive plant genomes, pan‑genome alignment, and large‑scale intra‑specific (pan‑genome) and inter‑specific evolutionary studies
• Conduct statistical and quantitative‑genetics investigations – perform GWAS, QTL mapping, population‑genetics analyses, and other quantitative methods to evaluate feedstock traits, response to selection, and polyploidy effects
• Execute comparative‑genomics and evolutionary analyses – apply externally developed tools (with metric development) to quantify synteny, homeologous segments, and evolutionary relationships across species
• Prepare, clean, and integrate raw sequencing, phenotypic, and environmental data – carry out quality‑control, preprocessing, and data‑integration workflows; summarize key trends and recommend analytical approaches
• Create and maintain data analysis systems – implement flat‑file data systems and version‑controlled code repositories that organize, characterize, and automate reporting of genomic results; document provenance and metadata in line with FAIR principles
• Review emerging software and incorporate novel methods – evaluate new tools for genome and pan‑genome analysis, assess impacts on existing pipelines, and modify or combine methods to meet specific CABBI research goals
• Stay current on technical advances in storage, documentation, and dissemination – monitor and recommend best‑practice solutions for genomic data stewardship, ensuring long‑term accessibility for bioenergy‑feedstock projects
• Lead and mentor junior analysts, graduate students, and support staff – provide technical guidance, review analytical outputs, and oversee routine analyses while maintaining quality and consistency

• Thorough knowledge of concepts and methods in computational genomics.
• Thorough skills associated with statistical analysis and systems programming.
• Thorough skills in analysis and consultation.
• Skills to communicate complex information in a clear and concise manner, both verbally and in writing.
• Research skills at a level to evaluate alternative…