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Research Senior Scientist, Cheminformatics AI​/ML

Job in Boston, Suffolk County, Massachusetts, 02298, USA
Listing for: Scorpion Therapeutics
Full Time position
Listed on 2026-08-30
Job specializations:
  • Research/Development
    Data Scientist
  • IT/Tech
    AI Engineer (Applied/Software), Machine Learning/ ML Engineer, Data Scientist
Salary/Wage Range or Industry Benchmark: 137000 - 215270 USD Yearly USD 137000.00 215270.00 YEAR
Job Description & How to Apply Below

Objective /

Purpose:

  • Skilled cheminformatic scientist to join cheminformatics team to foster a “prediction-first” culture by integrating cheminformatics, computational chemistry, and machine learning to accelerate drug design.
  • Collaborate with medicinal chemistry, DMPK, and AI/ML teams; define a roadmap for computational tools that empower medicinal chemists.
Accountabilities:
  • Develop and apply agentic AI solutions for drug discovery, including autonomous or human-in-the-loop workflows integrating scientific reasoning, molecular design/optimization and data analysis, and computational tools.
  • Identify opportunities across the DMTA cycle for predictive acceleration; build models for molecule design/ optimization and extract medchem knowledge from chemical/biological datasets.
  • Establish and maintain MLOps capabilities: reproducible training/deployment pipelines, lifecycle orchestration, performance monitoring, versioning, scheduled retraining.
  • Build and enable search/analytics across ultra-large chemical databases (scalable ingestion, standardization, indexing, similarity/substructure search, distributed computing).
  • Implement innovative computational methods for drug discovery (AI-based discovery, generative chemistry, synthesizable chemical space exploration, DEL data analysis, DEL/ML).
  • Act as a trusted thought partner to ideate and execute chemistry strategies aligned to therapeutic goals.
Qualifications:
  • PhD in Computational Chemistry, Cheminformatics, Computer Science, or related field; 2+ years in pharma/biotech.
  • Experience developing agentic AI systems for drug discovery and integrating/orchestrating chemical/biological databases, foundation models, scientific software tools, and multi-step workflows.
  • Hands-on MLOps/model lifecycle management (orchestration, CI/CD, registries, monitoring, version control, deployment in cloud or HPC).
  • Experience building/searching ultra-large chemical databases; familiarity with cloud storage, vector search, and chemical indexing desired.
  • Programming/scripting:
    Python, R, C/C++; ability to design/automate scalable workflows.
  • Strong cheminformatics toolkit expertise (e.g., RDKit); comprehensive DMTA-cycle knowledge; experience leading DMTA acceleration initiatives.
Benefits:
  • U.S. base salary range: $–$ (plus potential incentives and benefits such as medical/dental/vision, 401(k) match, disability, life insurance, tuition reimbursement, volunteer time off, holidays, well-being benefits, sick time, and paid vacation).
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Position Requirements
10+ Years work experience
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