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Principal Scientist - R&D DSDH Ontology Developer TDS Therapeutics Development & Supply; TDS

Job in Cambridge, Middlesex County, Massachusetts, 02140, USA
Listing for: Scorpion Therapeutics
Full Time position
Listed on 2026-05-31
Job specializations:
  • IT/Tech
    Data Analyst, Data Science Manager, Data Scientist, AI Engineer
Salary/Wage Range or Industry Benchmark: 125000 - 150000 USD Yearly USD 125000.00 150000.00 YEAR
Job Description & How to Apply Below
Position: Principal Scientist - R&D DSDH Ontology Developer TDS Therapeutics Development & Supply (TDS)

Position Summary

  • Design, build, and govern semantic frameworks that unify data across the development-to-delivery lifecycle for Therapeutics Development & Supply (TDS).
  • Translate scientific, technical, and operational concepts into ontologies, controlled vocabularies, and semantic models enabling interoperability, analytics, automation, and AI/ML applications.
  • Partner with domain experts in Process Development, Manufacturing, Quality, Supply Chain, and Data Science.
Key Responsibilities Ontology Design, Development & Release
  • Model, code, test, and publish ontology modules and controlled vocabularies supporting TDS data ecosystems (e.g., process development, material attributes, equipment hierarchies, batch/product genealogy, quality signals, supply chain flows).
  • Translate SME domain knowledge into OWL/RDF, SKOS, and SHACL using established ontology engineering practices.
  • Produce validated, versioned semantic models and API‑ready outputs for enterprise platform integration.
  • Build mappings to enterprise canonical models, regulatory standards, and cross‑functional ontologies.
Governance, Standards & Quality
  • Own components of the TDS ontology roadmap (scope, priority, use cases, success metrics).
  • Define/enforce modeling guidelines, naming/versioning conventions, change control, and release/deprecation rules.
  • Implement data quality checks (coverage, conformance, identifier normalization, provenance capture).
  • Produce automated validation reports and maintain SPARQL queries/tests.
Integration with Data Products, Analytics & ML
  • Enable knowledge graphs, data products, advanced analytics, and AI/ML workflows.
  • Embed semantic layers into data pipelines and metadata systems with Data Engineering and Data Architecture.
  • Support automation of classification, normalization, and entity linking using ML/NLP.
Collaboration & Cross-Functional Engagement
  • Work with SMEs across Process Development, Manufacturing, Quality, Supply Chain, and Digital/Data Science to capture semantics and validate ontology structures.
  • Participate in enterprise communities of practice for data standardization, interoperability, and ontology reuse.
  • Engage stakeholders to ensure fit-for-purpose semantic design and delivery.
Qualifications Required
  • Master’s degree or Ph.D. in Life Sciences, Engineering, Computer Science, Mathematics, or related field.
  • 3–5+ years hands‑on ontology engineering/knowledge modeling/semantic standards/knowledge graph development.
  • Proficiency with OWL, RDF(S), SKOS, SHACL, SPARQL, ontology design patterns, and reasoning workflows.
  • Experience with graph databases (e.g., Neo4j, Graph

    DB).
  • Strong analytical problem solving and requirements gathering; ability to translate SME discussions into semantic structures.
  • Proven ability to manage multiple projects and deliver high‑quality outcomes.
Preferred
  • Experience with biopharmaceutical development, GMP manufacturing, quality systems, or supply chain data.
  • Familiarity with ISA‑88/95, GS1, HL7/FHIR, or manufacturing‑oriented ontologies.
  • Familiarity with ML/NLP techniques for metadata extraction, classification, or ontology enrichment.
  • Understanding of enterprise data platforms, metadata systems, and knowledge graph architectures.
Required Skills
  • Advanced Analytics, Critical Thinking, Data Analysis, Data Quality, Data Reporting, Data Science, Data Visualization, Digital Fluency, Data Privacy Standards, Strategic Thinking, Technical Credibility, Workflow Analysis, Organizing, Process Improvements.
  • Coaching, Econometric Models.
Preferred Skills
  • Coaching, Econometric Models.
Benefits (time off)
  • Vacation: 120 hours/year
  • Sick time: 40 hours/year (CO: 48; WA: 56)
  • Holiday pay including Floating Holidays: 13 days/year
  • Work/Personal/Family Time: up to 40 hours/year
  • Parental Leave: 480 hours
  • Bereavement Leave: 240 hours (immediate) and 40 hours (extended)
  • Caregiver Leave: 80 hours
  • Volunteer Leave: 32 hours
  • Military Spouse Time-Off: 80 hours
Application Instructions

Apply for EMEA locations using requisition: R-069218.

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