GeneDx Software Engineer - Lab Informatics

Gene Dx Software Engineer – Lab Informatics

Gene Dx is a rapidly growing CAP and CLIA certified diagnostic genetic testing laboratory for molecular genetics. We apply cutting‑edge technologies to provide a wide array of molecular genetic diagnostic tests, including whole‑exome sequencing and next‑generation sequencing panels. Our mission is to make clinical diagnostic testing available for people with genetic conditions and their families.

The Gene Dx Software Engineer – Lab Informatics works on the production genomic laboratory informatics team developing and utilizing programs for the collection, storage, management, analysis, and reporting of clinical sequencing data.

• Develop new and modify existing applications and systems, including translating laboratory requirements into technical specifications for development and supporting existing legacy systems
• Develop software and user interfaces for laboratory applications
• Update existing laboratory applications
• Translate laboratory requirements into technical specifications for development
• Conduct system and unit testing
• Provide user and technical support for lab informatics systems
• Create detailed technical documentation for software and testing

• MS in computer science or a related field with at least 2 years of professional software development experience OR BS in computer science, molecular biology, genetics, or a related field with at least 4 years of professional software development experience
• Demonstrated proficiency in Python or another major scripting language (Ruby, Perl)
• Demonstrated Linux command‑line proficiency including Bash/Shell scripting
• Experience with Git, SVN, or other version control systems
• Experience with relational databases (Microsoft SQL, MySQL, Postgres)
• Experience working in Windows, Linux, and HPC (SGE/Slurm) environments
• Strong verbal and written communication skills
• Demonstrated ability to work both independently and in a development team

• 2+ years CLIA/CAP/NY State/FDA laboratory informatics experience
• Experience with genomic or next‑generation sequencing data and laboratory processes
• Experience with automated testing and continuous deployment
• Experience with software project management systems or concepts (JIRA, Kanban, etc.)
• Knowledge of web application concepts (MVC, jQuery, etc.)
• Experience with Docker
• Experience with VBA
• Experience creating and maintaining software documentation in a regulatory environment

• Paid Time Off (vacation, sick, personal, holiday, jury duty, bereavement leave)
• Health, dental, vision, life insurance, long‑term and short‑term disability plans
• Flexible Spending Account (FSA)
• Health Savings Account (HSA)
• 401(k) retirement savings plan with a 4% company match and immediate vesting
• Tuition Assistance
• Employee Discounts (cell phone service, movie tickets, etc.)
• Many promotions from within
• Business casual, dog‑friendly work environment

All your information will be kept confidential according to EEO guidelines.