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Advisor – Process Engineer. Lilly Medicine Foundry

Job in Indianapolis, Hamilton County, Indiana, 46262, USA
Listing for: Scorpion Therapeutics
Full Time position
Listed on 2026-08-30
Job specializations:
  • Engineering
    Process Engineer, Chemical Engineering, Pharma Engineer, Validation Engineer
Salary/Wage Range or Industry Benchmark: 150000 - 190000 USD Yearly USD 150000.00 190000.00 YEAR
Job Description & How to Apply Below
Location: Indianapolis

Responsibilities

  • Serve as technical authority for equipment design and scale-up calculations across the Foundry’s small molecule node.
  • Lead detailed engineering calculations, heat/mass transfer modeling, and equipment sizing for production suites (small molecule, peptide, oligonucleotide, and new modalities).
  • Conduct and direct rig-fit assessments for incoming processes using simulation tools (e.g., Dyno Chem, Aspen) to validate scale-up readiness (reactor geometries, mixing, heat transfer, pressure ratings).
  • Provide guidance on reactor selection/design for batch/semi-batch, continuous flow, hydrogenation systems, SPPS peptide synthesis reactors, and oligonucleotide synthesis platforms.
  • Drive scale-up from lab/kilo lab to pilot plant, ensuring rigorous evaluation and documentation of heat/mass transfer, mixing, and process safety at each scale transition.
  • Lead P& and communicate design intent/basis across disciplines, vendors, and partner functions.
  • Develop and maintain drug substance API manufacturing processes/control strategies; translate development-scale chemistry into fit-for-purpose equipment specifications.
  • Support preparation of IND/CTX sections and regulatory submissions/updates.
  • Author and ensure timely completion of technical reports, basis-of-design documents, and engineering specifications.
  • Plan/manage process engineering development activities; assign work, coordinate teams, and review progress.
  • Ensure compliance with laws/regulations, SOPs, GMP, and safety procedures; lead/participate in Process Hazard Reviews/HAZOPs and hazard assessments.
  • Train/mentor process engineers on equipment design, scale-up, GMP, and Foundry technical requirements.
Basic Qualifications
  • PhD in Chemical Engineering, Chemistry, Pharmaceutical Sciences, or related; OR
  • BS/MS in Chemical Engineering or related with 10+ years' experience in pharmaceutical/biotech/CMO process engineering for drug substance API development/manufacturing.
Additional Skills/Preferences
  • Expertise in chemical engineering fundamentals and small molecule API unit operations (reaction chemistry, crystallization, extraction, distillation, etc.).
  • Cross-functional project management experience.
  • Leadership, collaboration, and strong communication skills (verbal/written to operations, management, regulators).
  • Experience preferred: SMDD/equivalent R&D and manufacturing; cGMP process support in pilot/clinical environment; process simulation (Dyno Chem/Aspen) and controls systems (DeltaV).
  • Ability to prioritize in fast-paced startup settings and manage ambiguity.
Other Information
  • Initial location:
    Parkwood West, Indianapolis, IN; permanent location:
    Lilly Medicine Foundry, Lebanon, IN.
  • Limited travel (
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