Principal Scientist GMP Microbiology Lilly Medicine Foundry

At Lilly, the work is demanding because patients are waiting. We unite caring with discovery to help make life better for people around the world, knowing that every decision, every detail, and every day matters. Headquartered in Indianapolis, Indiana, our over 50,000 employees around the globe take on complex challenges to discover and deliver life-changing medicines, strengthen how health is understood and managed, and support the communities we serve.

This is hard, urgent, selfless work—but it’s work worth doing. If you’re driven by purpose and ready to bring your best to work that truly matters for patients, we invite you to join us.

Lilly recently announced a $4.5 billion investment to create the Lilly Medicine Foundry — the first-ever facility to combine research and manufacturing in a single location, expanding capacity for clinical trial medicines while reducing costs and environmental impact.

Analytical GMP Laboratories (AGL) supports GMP testing across the Lilly Medicine Foundry (LMF) and the broader Product Research & Development (PRD) network, spanning environmental monitoring, microbiology, GMP testing, raw materials, and cleaning/investigations. AGL sits at the intersection of science and quality — this role offers the opportunity to shape the analytical compliance program from the ground up and help drive quality culture at a cutting-edge facility.

The Principal Scientist, GMP QC Microbiology is the subject matter expert supporting the Sr. Advisor of Env. Monitoring & Microbiology in day-to-day microbiological testing and batch disposition for clinical GMP manufacturing at the Medicine Foundry Analytical GMP Laboratory. The role executes and oversees compendial and non-compendial microbiological testing including sterility, bioburden, endotoxin (Bacterial Endotoxin Test), microbial limits, and water testing; leads laboratory investigations;

authors change controls and SOPs; and trains and mentors junior analysts. Partnering with the Sr. Advisor, Quality Assurance, Manufacturing, and Regulatory Affairs, the role contributes to method validation and inspection readiness in compliance with cGMP, data integrity (ALCOA+), EU GMP Annex 1, and applicable global regulatory requirements.

• Perform and oversee sterility, bioburden, microbial limits, and water system testing; serve as primary data reviewer foraccurateandtimelybatch disposition.

• Perform microbial identification testing andmaintainthe site isolate library; supportEM activities as back-up coverage.

• Lead method validations, transfers, and verifications; prepare protocols and summary reports and author change controls for test methods, specifications, and SOPs.

• Support qualification of laboratory equipment and evaluate newrapid microbiological methods (RMM).

• Lead OOS/OOT andother laboratory investigations; author deviation reports and drive CAPA to closure with QA.

• Maintain documentation in a state of inspection readiness, serve as SME during inspections and audits, and support remediation of audit observations to closure.

• Stay current on applicable compendial standardsandregulatory requirements; update SOPs to reflect evolving requirements.

• Develop and deliver training for junior analysts on test methods, aseptic technique, andcGMP; serve asaqualifiedtrainer;andmaintaintraining records and competency matrices.

• Partner with the Advisor on lab workflow and continuous improvement initiatives. Handle biohazardous and hazardous materials per EHS requirements.

• Ensure laboratory, cleanroom, and manufacturing support activities are performed safely andin accordance with approved procedures, cleanroom behaviors, and GMP expectations.

• BS or MS in in Microbiology, Biology, Biochemistry, Pharmaceutical Sciences, or related technical discipline

• BS with 5+ years or MS with 3+ years of experience in cGMP pharmaceutical microbiology experience, including compendial method execution, investigation authoring, and analyst mentoring.

• Equivale…