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Advisor - Agent Research

Job in Indianapolis, Hamilton County, Indiana, 46262, USA
Listing for: Scorpion Therapeutics
Full Time position
Listed on 2026-08-30
Job specializations:
  • Software Development
    AI Engineer (Applied/Software), Machine Learning/ ML Engineer
Salary/Wage Range or Industry Benchmark: 120000 - 180000 USD Yearly USD 120000.00 180000.00 YEAR
Job Description & How to Apply Below
Location: Indianapolis

Responsibilities:

  • Partner with scientists to build autonomous agents for molecule discovery tasks.
  • Design and build reinforcement learning (RL) environments with appropriate state/action/termination semantics for discovery.
  • Curate and engineer reward functions from noisy scientific signal.
  • Post-train domain models (SFT, DPO/GRPO/PPO, reward modeling, distillation) on chemistry and biology tasks.
  • Integrate learned policies with domain tools (RDKit, molecular graph ML, ELN/LIMS APIs, instrument drivers) to execute real DMTA tasks.
  • Build evaluation infrastructure (task suites, scoring harnesses, regression/experiment tracking e.g., MLflow).
Basic Qualifications:
  • PhD (or MS + 3 yrs / BS + 5 yrs) in ML, Bioinformatics, Cheminformatics, Computer Science, or related field with demonstrated wet-lab collaboration/hands-on experience.
  • ~1–2 years applying AI/ML in scientific disciplines (biology, chemistry, neuroscience, etc.).
  • Hands-on experience training/post-training AI models.
Preferred Qualifications /

Skills:
  • Python; deep learning frameworks (PyTorch, Tensor Flow, JAX, Hugging Face).
  • RL and post-training methods (PPO, GRPO, DPO, reward modeling, RLHF/RLAIF) and libs (TRL, verl, or equivalents).
  • Molecular representation learning/generative chemistry/protein-nucleic acid models.
  • Agentic AI systems experience (OpenAI/Anthropic Agent SDK, Lang Chain, Smol agents).
  • Cloud end-to-end system experience (APIs/frontends/agent platforms);
    Git Hub portfolio a plus.
  • Cloud-native pipeline knowledge (AWS/Azure), Nextflow/Argo on Kubernetes.
  • Research contributions/publications; mentoring experience.
Benefits:
  • Eligible for company bonus; 401(k), pension, vacation; medical/dental/vision/prescription; flexible benefits; life insurance; time off/leave; well-being benefits (EAP/fitness/clubs).
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