Remote Biomedical Systems Engineer

Remote Biomedical Knowledge Systems Engineer

Location:

Marlborough, Massachusetts, United States

Compensation: $38.00 - $39.00 (US Dollar)

Biomedical Knowledge Systems Engineer needs 3 years dedicated experience in software development and highly specialized biomedical system administration.

PART TIME: 20 hours weekly

• Mandatory extensive knowledge and hands-on experience with both Mark Logic and Mongo
  
  DB document databases, including direct experience with complex data migration scenarios between these platforms
• Bachelors degree in Computer Science, Bioinformatics, or a related discipline
• Demonstrated proficiency in advanced AWS services (Secrets Manager, Elastic Beanstalk, EC2) for secure, compliant application deployment and management within regulated environments
• In-depth, practical experience with data curation, retrieval, and management using datasets and APIs from FDA, AACT, and clinical trials.gov—including expertise in regulatory data standards and integration techniques
• Proven expertise with NLM biomedical data infrastructures (including Pub Med, PMC, and Gene Expression Omnibus), encompassing large-scale automated ingestion, normalization, and semantic integration of publication and experimental data
• Direct, production-level experience with NLP, GenAI, LLM agentic frameworks applied to real-world biomedical use-cases, demonstrating the ability to build custom pipelines for semantic search and knowledge graph construction
• Highly proficient in full-stack engineering, with significant track record in modern frontend frameworks (including vue.js or equivalent), backend API design, and cloud-based microservices architecture tailored to scientific workflows
• Prior stewardship of unique and custom-built biomedical information systems with complex, multi-sourced data pipelines
• Documented contributions to FDA regulatory information systems and prior collaborative work with scientific publication analytics
• Independently manage, maintain, and evolve our custom semantic scientific search platform, performing high-level refactoring, troubleshooting, and architectural upgrades as necessary
• Provide comprehensive administrative, operational, and development support for legacy biomedical informatics systems

• Same requirements as listed above for consistency (see responsibilities) – 3+ years in software development and biomedical systems, bachelor’s degree, and experience with Mark Logic/Mongo
  
  DB, AWS, data curation and regulatory data standards, NLM data infrastructures, NLP/GenAI, full-stack engineering, and FDA-related work.