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Sr. Scientist, Analytical Development & Quality Control

Job in San Diego, San Diego County, California, 92189, USA
Listing for: BioPhase
Full Time position
Listed on 2026-09-13
Job specializations:
  • Research/Development
    Research Scientist, Data Scientist, Pharmaceutical Science/ Research
Salary/Wage Range or Industry Benchmark: 140000 - 190000 USD Yearly USD 140000.00 190000.00 YEAR
Job Description & How to Apply Below

We are seeking an experienced and motivated Senior Scientist to join our Analytical Development & Quality Control group. This individual will bring deep expertise in analytical chemistry applied to oligonucleotide therapeutics, with hands-on proficiency across a suite of advanced instrumentation including QTOF-MS, LC-MS, HPLC, and GC. The successful candidate will play a key role in developing and validating analytical methods for oligonucleotide drug substances and starting materials, characterizing reference standards, conducting analytical investigations, and contributing to CMC regulatory submissions — all within a GMP environment.

This role requires a high degree of scientific independence, strong attention to detail, and the ability to thrive in a fast-paced, cross-functional setting.

Key Responsibilities
  • Develop and validate analytical methods for oligonucleotide drug substances, starting materials, and related impurities using ion-pair reversed-phase HPLC, LC-MS, QTOF-MS, GC, and MALS.
  • Apply high-resolution QTOF mass spectrometry for accurate mass determination, sequence confirmation, and detailed impurity profiling of phosphorothioate oligonucleotides and related analogs.
  • Utilize MALS (Multi-Angle Light Scattering) for molecular weight determination and aggregation characterization of oligonucleotide drug substances.
  • Characterize new reference standards using a broad range of orthogonal analytical techniques including UV, MS, NMR, and hyphenated LC techniques.
  • Conduct routine and non-routine analysis of raw materials and starting material samples; review data for compliance to established specifications.
  • Design and execute analytical investigations, including out-of-specification (OOS) and out-of-trend (OOT) investigations, with thorough root cause analysis and CAPA development.
  • Author scientific reports, analytical method validation packages, and contribute to CMC sections of IND, NDA, and MAA regulatory filings.
  • Write and revise SOPs, analytical methods, equipment procedures, and material specifications in accordance with GMP requirements.
  • Develop stability-indicating methods and contribute to stability programs for oligonucleotide drug substances and drug products.
  • Present scientific findings at internal project meetings and cross-functional team discussions; contribute to external publications and conference presentations as appropriate.
  • Serve as an analytical subject matter expert on cross-functional teams spanning process development, manufacturing, and regulatory affairs.
Requirements
  • Ph.D. in Analytical Chemistry, Pharmaceutical Sciences, or a closely related discipline with 2+ years of relevant industry; or an M.S. with 8+ years of industry experience.
  • Required:

    demonstrated hands-on experience in analytical development for oligonucleotide therapeutics (ASOs, siRNA, or related modalities). Candidates with oligonucleotide experience will be prioritized.
  • Advanced proficiency with QTOF mass spectrometry for oligonucleotide characterization, impurity identification, and accurate mass analysis.
  • Expertise in ion-pair reversed-phase LC-MS for oligonucleotide purity, assay, and impurity profiling, including method development and validation.
  • Skilled in HPLC and GC method development and validation; familiarity with multiple detection modes (UV, fluorescence, CAD, MS).
  • Thorough understanding of ICH guidelines (Q1, Q2, Q6) and FDA method validation requirements, including phase-appropriate strategies.
  • Practical knowledge of GMP requirements; hands‑on GMP laboratory experience strongly preferred.
  • Experience authoring CMC sections of regulatory submissions (INDs, NDAs, or equivalent) is highly desirable.
  • Strong problem‑solving skills with ability to manage multiple priorities and meet aggressive timelines across concurrent projects.
  • Excellent written and verbal communication skills; ability to present complex scientific data clearly to diverse audiences.
  • Ability to work both independently and collaboratively within a matrix environment.
Preferred Qualifications
  • Experience with 2D-LC or multidimensional chromatographic separations for complex oligonucleotide impurity profiling.
  • Familiarity with accelerated stability assessment programs (ASAP) for oligonucleotide therapeutics.
  • Knowledge of oligonucleotide chemical modifications including phosphorothioate backbones, 2'-modifications, and GalNAc conjugates.
  • Experience with Empower, Mass Lynx, or equivalent chromatography data systems.
  • Publication record or conference presentations in…
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