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Advisor - Agent Research

Job in San Diego, San Diego County, California, 92189, USA
Listing for: Scorpion Therapeutics
Full Time position
Listed on 2026-09-12
Job specializations:
  • Software Development
    AI Engineer (Applied/Software), Machine Learning/ ML Engineer
Salary/Wage Range or Industry Benchmark: 151500 - 222200 USD Yearly USD 151500.00 222200.00 YEAR
Job Description & How to Apply Below

Position Summary

  • Design the learning layer of a scientific agent platform to enable agents to improve from experimental feedback; translate wet-lab and computational endpoints into trainable signals.
Responsibilities
  • Partner with scientists to build autonomous agents for molecule discovery tasks.
  • Design and build reinforcement learning (RL) environments with appropriate state/action/termination semantics.
  • Curate and engineer reward functions from noisy scientific signals.
  • Post-train domain models (SFT, DPO/GRPO/PPO, reward modeling, distillation) on chemistry and biology tasks.
  • Integrate learned policies with domain tools (RDKit, molecular graph ML, ELN/LIMS APIs, instrument drivers) to execute DMTA tasks.
  • Build evaluation infrastructure: task suites, scoring harnesses, regression and experiment tracking (e.g., MLflow).
  • Represent Frontier AI in the AI research community (publish, talks, reviews) and scout trends.
  • Evaluate external vendors, open-source projects, and academic collaborations.
Basic Qualifications
  • PhD (or MS + 3 yrs / BS + 5 yrs equivalent) in Machine Learning, Bioinformatics, Cheminformatics, Computer Science, or related field with demonstrated wet-lab collaboration/hands‑on experience.
  • ~1–2 years applying AI/ML in scientific disciplines (industry postdoc counts).
  • Hands‑on experience training/post‑training AI models.
Additional Preferences
  • Python; deep learning frameworks (PyTorch/Tensor Flow/JAX/Hugging Face).
  • RL/post‑training methods (PPO, GRPO, DPO, reward modeling, RLHF/RLAIF) and libraries (TRL/verl or equivalent).
  • Molecular representation learning, generative chemistry, or protein/nucleic acid models.
  • Agentic AI systems (OpenAI/Anthropic Agent SDK, Langchain, Smol agents).
  • Cloud end‑to‑end systems; AWS/Azure;
    Nextflow/Argo on Kubernetes.
  • Publications in relevant ML/NLP venues; mentoring experience.
Application/Benefits
  • None explicitly included beyond compensation/benefits: $151,500–$222,200 + potential company bonus; comprehensive benefits including 401(k), pension, vacation, medical/dental/vision/prescription, flexible benefits, life insurance, time off/leave, and well‑being benefits.
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