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CADD Scientist

Job in San Francisco, San Francisco County, California, 94199, USA
Listing for: SLS Services Limited
Full Time position
Listed on 2026-06-17
Job specializations:
  • Engineering
    AI Engineer (Applied/Software), Artificial Intelligence, Research Scientist, Biotechnology
Salary/Wage Range or Industry Benchmark: 80000 - 100000 USD Yearly USD 80000.00 100000.00 YEAR
Job Description & How to Apply Below
Position: Staff CADD Scientist

Are you an experienced Staff Computational Chemist with a passion for designing real molecules and seeing them made within days, not months? Do you thrive at the intersection of CADD, AI-driven design, and automation
? This is a rare opportunity to join a pioneering deep-tech company where your work directly shapes the future of drug discovery. We are looking for a Staff CADD Scientist to take ownership of computational strategy, integrating cutting-edge simulation and machine learning into a platform that closes the design–make–test loop at unprecedented speed. The Employer

Our client is a Series B deep-tech company transforming chemical discovery by combining AI, robotics, and the largest ever-growing database of chemical programs. Their state-of-the-art robotic facility in Glasgow provides a high-throughput bridge from in silico models to physically synthesised compounds, giving scientists a unique ability to turn design into reality faster than traditional pharma methods. With a San Francisco base (hybrid) and UK site, this is an ambitious, impact-driven environment at the forefront of AI and chemistry.

Qualifications

& Experience
  • PhD (or equivalent) in Computational Chemistry, Structural Biology, Biophysics, Physics, or related discipline.
  • 8+ years hands‑on experience in CADD for small-molecule drug discovery, including strategy ownership and delivery.
  • Expertise across structure- and ligand-based design plus proficiency with MOE, OpenMM/GROMACS/AMBER, PyMOL.
  • Strong Python skills and experience with cheminformatics toolkits (RDKit, Open Eye), GPU-accelerated workflows, and cloud/HPC.
  • Familiarity with modern ML for molecular design (GNNs, generative models) and understanding of when they complement traditional methods.
  • Proven leadership and experience presenting complex computational reasoning to chemists and partners.
Responsibilities
  • Lead computational strategy on drug discovery programmes from hit discovery through lead optimisation.
  • Design and prioritise molecules for synthesis; partner with chemists on SAR-driven hypotheses and MPO.
  • Apply CADD methods, docking, pharmacophore, shape and 3D similarity, MD, FEP, QSAR, blending physics and ML-based approaches.
  • Help develop a reproducible, API-driven computational platform and cost‑efficient GPU/HPC pipelines.
  • Mentor junior scientists, influence hiring, and represent the business externally across conferences and partnerships.
Skills / Technical Competencies
  • Advanced command of ligand- and structure-based design workflows.
  • Proficiency with CADD toolkits, molecular dynamics, and QSAR.
  • Strong programming in Python, cheminformatics libraries, and experience with production-level pipelines.
  • Cloud/HPC workflow management and GPU acceleration.
Nice to Haves
  • Hands‑on FEP experience (FEP+, OpenFE).
  • Practical use of generative chemistry models and active learning in iterative design loops.
  • Experience integrating CADD tools into API-first platforms and MLOps environments.
  • Contributions to peer‑reviewed publications or open‑source projects in CADD.
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