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Principal Bioinformatics Scientist

Job in South San Francisco, San Mateo County, California, 94083, USA
Listing for: Veracyte, Inc.
Full Time position
Listed on 2026-09-13
Job specializations:
  • Research/Development
    Data Scientist, Biotech Research, Research Scientist, Regulatory Compliance Specialist
Salary/Wage Range or Industry Benchmark: 184000 - 210000 USD Yearly USD 184000.00 210000.00 YEAR
Job Description & How to Apply Below

At Veracyte, we offer exciting career opportunities for those interested in joining a pioneering team that is committed to transforming cancer care for patients across the globe. Working at Veracyte enables our employees to not only make a meaningful impact on the lives of patients, but to also learn and grow within a purpose driven environment. This is what we call the Veracyte way – it’s about how we work together, guided by our values, to give clinicians the insights they need to help patients make life-changing decisions.

Our

Values
  • We Seek A Better Way:
    We pursue bold ideas, embrace complexity, and keep pushing forward.
  • We Make It Happen:
    We act with urgency, deliver with excellence, and always find a way.
  • We Are Stronger Together:
    We engage with empathy, align around what's best for Veracyte, and celebrate as one team.
  • We Care Deeply:
    We show up with integrity, kindness, and respect for one another.
Job Description

We are seeking a highly experienced and motivated Principal Bioinformatics Scientist to lead the bioinformatics strategy, design, and development of next-generation minimal residual disease (MRD) laboratory-developed tests (LDTs). This role is a senior technical leadership position responsible for shaping assay concepts, driving analytical development and validation, and partnering closely with wet-lab, clinical, quality, regulatory, and software teams to deliver robust, clinically actionable MRD diagnostics for multiple indications.

The ideal candidate brings deep expertise in NGS-based oncology assays, strong understanding of ctDNA biology and a proven track record of industry assay development under design control. This individual will serve as a scientific and technical leader, owning assay bioinformatics from concept through analytical validation and launch.

Key Responsibilities Scientific & Technical Leadership
  • Lead bioinformatics strategy for MRD assay design, development, optimization, and lifecycle management for LDTs developed under CAP/CLIA quality systems.
  • Serve as the bioinformatics owner, driving study design, data analysis, performance characterization, and decision-making throughout development.
  • Apply deep domain knowledge in cancer genomics, ctDNA biology, and NGS technologies to inform assay architecture, variant detection strategies, and error suppression approaches.
Assay Development & Validation
  • Design and execute analytical studies to evaluate assay performance, including accuracy, limit of detection, and reproducibility, in collaboration with wet-lab and biostatistics partners.
  • Develop, validate, and maintain scalable, production-ready bioinformatics pipelines for MRD analysis, including QC, variant calling, MRD calling logic, and reporting.
  • Lead benchmarking and optimization of computational methods, including background error modeling, and longitudinal MRD tracking.
  • Ensure compliance with standards (CAP/CLIA, FDA, IVDR) throughout the bioinformatics development lifecycle, including rigorous testing and documentation.
Cross‑Functional Collaboration
  • Partner closely with molecular biology, assay development, QA/RA, clinical, and software engineering teams to ensure bioinformatics solutions are aligned with assay design, regulatory expectations, and operational constraints.
  • Facilitate successful production pipeline deployment by working closely with infrastructure and engineering teams
  • Contribute to regulatory submissions and audits by providing technical documentation and validation report, and responses to audits or regulatory inquiries.
Mentorship & Influence
  • Mentor junior scientists by providing technical and scientific guidance, helping raise the overall bar of assay development rigor and execution.
  • Communicate complex analytical concepts and results clearly to…
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